stand-alone application matlab 9.1 Search Results


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MathWorks Inc openguts matlab
Openguts Matlab, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc components
Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the <t>components</t> density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.
Components, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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DUTSCHER DOMINIQUE jar & rack staining jar, 50 slides 048903
Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the <t>components</t> density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.
Jar & Rack Staining Jar, 50 Slides 048903, supplied by DUTSCHER DOMINIQUE, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the <t>components</t> density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.
Razor Blades, supplied by DUTSCHER DOMINIQUE, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the <t>components</t> density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.
Lens Cleaning Tissue, supplied by Thorlabs, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the <t>components</t> density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.
Square Petri Dishes, supplied by DUTSCHER DOMINIQUE, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the components density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.

Journal: Nature protocols

Article Title: Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues.

doi: 10.1038/s41596-020-00471-4

Figure Lengend Snippet: Fig. 8 | Mixture modeling reveals two latent subpopulations of mEos2-PHEVECT2 molecules. a, RStudio interface splitted in ‘Script’, ‘Console’ and ‘Environment/File/Plot/Packages/Help’ sections (Step 64). b, Histograms for Dinst and log10(Dinst) plots obtained for one cell expressing mEos2-PHEVECT2 and displayed for each cell in c (30 equally spaced bins by default). c, MM analysis from pooled six cells (‘hist_log10D_pool_suffix’ .tif output with ‘suffix’ type of the model). Top right, histogram of log10(Dinst) from pooled cells, with the components density of the best BIC MM plotted (GMM-2E here). Vertical black line indicates the optimal log10(Dinst) threshold and partitions mobile (orange) and immobile (blue) molecules. The dots indicate the estimated means of the MM. n corresponds to the number of molecules kept after filtering for the blinking and duration parameters. All the source data are available from http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/.

Article Snippet: ● Jar & Rack staining jar, 50 slides (Dutscher, 048903), plastic rack (VWR, cat. no. 631-9520) ● Coverslips Menzel glaser 24 mm × 40 mm (VWR, MENZBB024040M113), 0.13–0.16-mm thickness ● Microscope slides (Sigma-Aldrich, cat. no. CLS294875X25) ● Corning Costar TC-Treated Multiple Well Plates, size 12 wells (Sigma-Aldrich, cat. no. CLS3513-50EA) ● Lens cleaning tissue (Thorlabs, cat. no. MC-5) ● Surgical tape, 12.5mm (VWR, cat. no. 115-8172) ● 0.22-μm filters (Merck, cat. no. SLGS033SS) ● Square Petri dishes (Dutscher, cat. no. 132511) ● Aluminum foil (Sigma-Aldrich, cat. no. Z185140) ● Razor blades (Dutscher, cat. no. 132511) ● Tweezers, Dumont #5 (Thermo Fisher Scientific, cat. no. 15483542) ● Microscope equipped with a TIRF arm and a TIRF objective (for example, Zeiss Elyra 7, Gataca Systems Ilas3 module and Leica DMi8 S module infinity TIRF) ● Ultrasensitive EMCCD camera dedicated to single-molecule detection (for example, Andor iXonEM+ or XU_897) ● Computer with at least 8 GB of RAM, an SSD disk with >100 GB and a multi-core processor Software ● ImageJ/FIJI (https://fiji.sc/) ● MATLAB runtime for R2019a, standalone set of shared libraries that enable the execution of compiled MATLAB applications or components (https://www.mathworks.com/products/compiler/matlabruntime.html?s_tid=srchtitle) ● sptPALM_viewer code is available on GitHub (https://github.com/jbfiche/sptPALM_cbs), and a standalone application is freely available here: (http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_da ta/ in the Softwares.zip file) ● MTT (http://www.ciml.univ-mrs.fr/fr/technologie/imagimm/softwares)45,46 or TrackMate (https://ima gej.net/TrackMate)76 ● Stack_Split_macro.ijm (http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/ in the Softwares.zip file) ● SPTpalm_Rscript.R R script (http://bioserv.cbs.cnrs.fr/DOWNLOAD/sptPALM_data/ in the Softwares.zip file) ● RStudio software (https://rstudio.com/products/rstudio/download/; using R version 4.0.0) to open and run the ‘SPTpalm_Rscript.R’ script PROTOCOL NATURE PROTOCOLS 1610 NATURE PROTOCOLS | VOL 16 |MARCH 2021 | 1600–1628 |www.nature.com/nprot ● data.table (https://cran.r-project.org/web/packages/data.table/index.html; version 1.12.8)90, mclust (https://cran.r-project.org/web/packages/mclust/index.html; version 5.4.6)91, mixsmsn (https://cran. r-project.org/web/packages/mixsmsn/index.html; version 1.1-7)89 R packages.

Techniques: Expressing